American Journal of Biological Anthropology
○ Wiley
Preprints posted in the last 90 days, ranked by how well they match American Journal of Biological Anthropology's content profile, based on 12 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.
Cleary, C. D.; Springs, L. C.; Locker, A. J.; Chase, D. Z.; Chase, A. F.; Chase, A. S.; Badillo, M. M.; Pederson Vallejos, A.; Cano, G.; Rodriguez, R.; Garcia-Ortiz, H.; Orozco, L.; Benn Torres, J.; Smith, R. W.; Reynolds, A. W.
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Maya peoples have undergone several largescale demographic transformations over the past 3000 years, including the formation and depopulation of large urban centers, climatic events, and multiple colonial regimes. Archaeological and stable isotope evidence from across the Maya lowlands throughout these periods paints a picture of a demographically mobile population with complex and dynamic relationships among some of the largest urban polities in antiquity. The nature of the genomic relationship between ancient Maya urban centers, as well as their relationship with present-day Maya communities, however, remains under-characterized. Here, we present mitogenomic data of 16 ancient Maya Ancestors recovered from interments in the ancient Maya cities of Caracol and Santa Rita Corozal located in Western and Northern Belize. These ancient data were combined with 110 newly collected contemporary individuals from Northern Belize, along with nearly 600 previously published ancient and contemporary comparative mitogenomes recovered from sites spanning Mesoamerica and the Caribbean to reconstruct paleodemographic and mobility patterns of maternal lineages through time. Our results are consistent with broadly interconnected Maya populations that have maintained maternal genetic continuity across much of the Holocene, and which are not structured by linguistic family.
Kaifu, Y.; Chang, C.-H.; Tarusawa, Y.; Sawafuji, R.; Yonemoto, S.; Shimamura, S.; Takai, M.; Kono, R. T.; Sun, C.-H.; Tsai, C.-H.; Yoneda, M.; Tsutaya, T.
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Denisovans are an extinct archaic Homo group whose lineage diverged from the Neanderthal lineage approximately 550,000 years ago and were widely distributed across eastern Asia until [~]45,000 years ago1-7. Their morphological features are known directly from the existing cranio- dental and phalangeal remains1,2,8-12. However, the body size and postcranial morphology of the Denisovans remain largely unknown. We here report that hominin femoral and tibial fossils recovered from the Penghu Channel, Taiwan, are Denisovans in their proteomic profiles. Morphologically, these specimens are among the largest leg bones known in Pleistocene Homo. They exhibit generally archaic features, but also show some modern human-like morphology, including a strong femoral pilaster. Our findings demonstrate that the Denisovan population at the northern circle had larger body size than earlier Homo erectus as well as Late Pleistocene Homo sapiens in eastern Asia. This challenges the generally held expectation that Pleistocene Homo followed Bergmanns rule that anticipates latitudinal decline of body size, and suggests that the large Denisovan brain resulted from their large body size at least partly. The strong pilaster developed in the Penghu femur suggests some behavioral similarities between the Denisovans and the Upper Palaeolithic modern humans and/or gene flow from the latter to the former.
Green, R. E.; Vohr, S. H.; Kapp, J. D.; Ailes, J. E.; Sacco, S.; Nguyen, R.; Cahill, J.; Heintzman, P. D.; Flores, J.; Kistler, L.; Hofman, C. A.; Fleischer, R. C.; Shapiro, B.; Kurin, R.
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Allegations that Thomas Jefferson fathered the children of the enslaved Sally Hemings emerged in the context of U.S. presidential politics in the late 1700s and early 1800s and entailed strongly contested denials and affirmations by family members, biographers, and historians ever since. Previous analysis of Y chromosome markers in contemporary members of the Jefferson and Hemings patrilines was consistent with the paternity hypothesis but rejected by those who pointed out that, absent Jefferson DNA and its direct comparison to the DNA of possible descendants, other Jefferson males could have fathered Sally Hemings children. In this study, we developed an innovative technique to recover DNA from multiple rootless hair samples in a museum collection whose provenance, mitochondrial genomes, Y chromosome markers, and identity to each other indicate that these hairs and the DNA from them are from Thomas Jefferson. Using these DNA data, we find clear evidence of Thomas Jefferson ancestry in descendants of both his wife Martha Wayles Jefferson and Sally Hemings. We measured the amount of identical-by-descent DNA shared between Thomas Jefferson and his known and putative descendants. We find that the amount of shared Jefferson DNA is more likely under the model of direct Thomas Jefferson paternity than other proposed scenarios.
Byrne, H. M.; Breet, I.; van Heuven, B. J.; Dearden, R. P.; Sanchez, S.; Johanson, Z.; Dean, M.; Ruecklin, M.
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Tessellated calcified cartilage (TCC) is a hallmark of the chondrichthyan skeleton, yet its development early in ontogeny across the four major groups (batoids, galeomorphs, squalomorphs, and holocephalans) remains poorly understood. Specialised traits of TCC, such as multi-layered TCC and internal mineralised trabeculae, typically develop in response to feeding mechanics. In this study, we evaluated TCC morphology in the jaws of 12 representative taxa to observe its structure at an early ontogenetic stage to determine whether these specialised features had yet developed. Batoids consistently exhibited well-developed, homogeneous, polygonal tesserae early in ontogeny regardless of jaw morphology or feeding habit. In contrast, galeomorphs displayed high morphological heterogeneity. Notably, we document the first report of an extensive internal trabecular network in a non-batoid elasmobranch, observed in Ginglymostoma cirratum, which may serve to resist the mechanical pressures of specialised suction feeding. Furthermore, we identified voussoir tesserae in galeomorphs for the first time, extending their documented presence across all elasmobranch groups, where they display an inverted aspect ratio (wider than tall) compared to mature forms. The durophagous Mustelus mustelus exhibited surprisingly poor TCC development despite being a durophagous feeder, pointing to a pronounced ontogenetic lag. In Squatina oculata, TCC was characterised by large and thick tesserae and extensive fused tesseral regions which may relate to its explosive ambush predation mode, whereas the holocephalan Chimaera exhibited a poorly mineralized, mesh-like structure without resolvable discrete tesserae or trabeculae-matching findings from previous studies. Across all specimens, multi-layered TCC was absent, confirming that multi-layering develops later in ontogeny. These results demonstrate that generalised models of TCC development based on one group or a few taxa fail to capture the broader diversity of TCC morphology. It also opens up many exciting avenues for further study, and forms the basis for comparisons with fossil chondrichthyans, to investigate the evolution of TCC.
Strassberg, S. S.; Angielczyk, K. D.
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The morphology of cranial sutures (i.e., joints that connect the bones of the skull, are sites of growth, and absorb biomechanical stresses) is highly variable, especially in mammals. Exposure to different strain regimes as a result of development, function, and ecology can drive disparity in suture complexity at both the individual and taxonomic levels. Although the relationships between diet, muscle mass, static loading, and certain behaviors (e.g., headbutting) and suture morphology are well studied, the effects of fossoriality, particularly the use of the craniodental apparatus during substrate excavation, remain largely unknown. We synthesize data using an ordinal ranking scheme for digging mode importance in 107 rodent species; premaxillofrontal and nasofrontal suture complexity as measured by sinuosity index, power spectrum density, and spectral entropy, the latter of which is a novel suture complexity metric; and Bayesian multilevel models to examine the fossoriality-suture phenotype relationship at the suborder level and above and predict digging mode usage in 11 cryptic extant species. Most fossorial rodents utilize multiple digging modes, often at varying levels of importance. Chisel-tooth digging importance is associated with reduced nasofrontal suture complexity in multiple suborders, whereas scratch digging importance is correlated with elevated complexity in the premaxillofrontal suture. Suture complexity poorly reflects head-lift digging importance. We demonstrate that fossorial function is a complex, multivariate trait and reveal new insights into the functional morphology of cranial sutures across the most diverse mammalian order.
Al Razi, H.; Muhayeyezu, F.; Mulindahabi, F.; Niyigaba, P.; Bantlin, D. A.; Kaplin, B. A.; Maloney, S. K.; Grueter, C. C.
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Behavioral thermoregulation allows animals to reduce the physiological costs associated with variation in the thermal environment, yet little is known about how chimpanzees respond behaviorally to the cool and humid conditions of tropical montane forests. We examined how microclimatic conditions influenced resting posture, sun/shade use, substrate use, vertical position within the canopy, and day nest use in eastern chimpanzees (Pan troglodytes schweinfurthii) in Nyungwe National Park, Rwanda. From March 2024 to February 2025, we collected 5,661 individual behavioral records during 486 contact hours and paired behavioral observations with measurements of ambient temperature, water vapor pressure, wind speed, and rainfall. Bayesian mixed models showed that temperature was the most consistent climatic correlate of resting behavior. Under cooler conditions, chimpanzees were more likely to adopt heat conserving postures, particularly curled and huddled postures, and to use day nests. As temperature increased, chimpanzees increased their use of shade, shifted from arboreal to terrestrial resting, and used lower canopy strata more frequently. Higher wind speed was also associated with reduced use of the upper canopy, whereas rainfall, water vapor pressure, and fruit availability generally showed weaker or behavior-specific associations. These findings indicate that chimpanzees in a cool montane forest flexibly adjust posture, solar exposure, substrate use, vertical position, and day nest use in relation to local thermal conditions. Resting behaviour may therefore provide an important context for behavioral thermoregulation, extending our understanding of chimpanzee thermal ecology beyond the warmer lowland and savanna habitats that have received most previous attention.
Ito, T.; Hayakawa, T.; Kurihara, Y.; Hanya, G.; Kaneko, A.; Natsume, T.; Aisu, S.; Honda, T.; Wakamori, H.; Yachimori, S.; Anezaki, T.; Omi, T.; Hayama, S.-i.; Kawamoto, Y.
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The relative roles of genetic drift, inbreeding, and natural selection in island evolution have been fundamental themes in evolutionary biology for nearly a century. However, empirical studies have yet to reach a consensus, and research integrating both genotypes and phenotypes in primates remains limited. The present study aims to estimate the demographic history of an island primate population, the Yakushima macaque (Macaca fuscata yakui), and evaluate the genomic and morphological consequences of its isolation. To this end, we conducted population genetic analyses based on whole-genome sequencing and geometric morphometric analyses of cranial shape. Our results indicate that M. f. yakui has been isolated with an effective population size of several thousand individuals for over 100,000 years. Although we detected signatures of purifying selection, deleterious alleles have not been sufficiently purged. The degree of fluctuating asymmetry in males was slightly, yet significantly, higher in M. f. yakui than in mainland populations, whereas this trend was not observed in females. Marginal evidence of directional selection was found for cranial size, but not for shape. Overall, our findings suggest that due to long-term isolation, genetic drift and inbreeding have exerted a substantial influence on shaping genotypic and phenotypic variation in this island population.
Rymbekova, A.; Kuhlwilm, M.
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Archaic introgression has shaped the evolutionary history of Eurasian populations, yet Central Eurasian region remains understudied despite being at the crossroads of ancient human migration. Here, we analyzed the whole-genome data of five Central Eurasian (CE) individuals from Early Bronze Age (EBA) and five present-day CE individuals to characterize the archaic introgression landscape. We estimated that archaic introgression from Neanderthal and Denisovan archaic hominins comprises approximately 2.2% of the Central Eurasian genomes. Both amount and chromosomal distribution of archaic introgression remained largely unchanged between the EBA and present-day CE individuals. Putative introgressed fragments matching the Altai Neanderthal and the Altai Denisovan were retrieved. Our results suggest that while the archaic introgression levels seemingly remained stable over the past several thousand years, larger modern CE genomes panels will be required to fully characterize the genomic landscape of archaic ancestry in the region.
Shigemitsu, D.; Anetai, S.; Anetai, H.; Kumaratilake, J.; Leigh, C.; Tokita, K.; Tojima, S.
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Koalas (Phascolarctos cinereus) are marsupials highly specialized for arboreal life and are considered a representative example of convergent evolution with primates, which are also adapted to arboreal habitats. The forelimb digital flexors play a crucial role in arboreal locomotion by flexing the digits and enabling the claws or fingers to engage with tree trunks and branches. Although the morphology and function of the digital flexors have been extensively examined in primates, anatomical information on koala digital flexors has not been sufficiently updated in modern anatomical studies. In this study, we examined the digital flexor muscles and their innervation in four forelimbs from three koalas to clarify both shared and distinctive structural features among arboreal mammals. The flexor digitorum profundus (FDP) was markedly developed, formed a U-shaped muscle belly, and received dual innervation from the median and ulnar nerves. In contrast, the flexor digitorum superficialis (FDS) was small, arose from the superficial surface of the FDP, was partially enclosed by the FDP muscle belly, and gave rise to extremely slender tendons inserting into digits II-V. The branch supplying the FDS arose from the main trunk of the median nerve near the carpal region, ascended proximally in a recurrent course, and terminated within the FDS. This unusual course may be consistent with a morphogenetic process underlying FDS formation. These findings indicate that the koala digital flexors are characterized by a markedly developed FDP, a relatively reduced FDS, and a distinctive innervation pattern of the FDS. Thus, even among mammals adapted to arboreal life, koalas and primates appear to have achieved arboreal adaptation through different morphological specializations within the forearm digital flexor system.
Obeso Fernandez, A.
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Introduction: Killer-cell immunoglobulin-like receptor (KIR) gene content shapes natural killer-cell responses and varies substantially among populations. We examined whether worldwide KIR diversity reflects regional structure, isolation by distance, serial founder effects, or latitudinal gradients. Data and methods: Carrier frequencies for 11 variable KIR genes were obtained from the Allele Frequency Net Database. The primary analysis included 189 locally sampled, non-diaspora, non-mixed populations from 70 countries, comprising 25,469 individuals; 161 populations had complete 11-gene profiles. Diversity indices, ordination, clustering, permutation-based variance decomposition, Mantel tests, and regression models were used to characterize geographic structure. Serial founder effects were evaluated using four distance measures from East Africa, both globally and within the Old World. Models of latitude incorporated spatial autocorrelation. Prespecified sensitivity analyses evaluated alternative population sets, gene panels, geographic classifications, weighting schemes, and multivariate outlier exclusion. Results: Geographic region explained 53.5% of variation in KIR profiles, substantially exceeding the permutation-null expectation of 6.9%, although multivariate dispersion differed among regions. Twenty-five of 28 pairwise regional comparisons remained significant after false-discovery-rate correction. Isolation by distance was modest (Mantel r=0.3003) and weakened after controlling for region (r=0.1557). KIR diversity did not decline with distance from East Africa globally but decreased strongly within the Old World (expected heterozygosity {beta}=-0.0066 and standardized gene content {beta}=-0.0789). B-content decreased nominally with absolute latitude, but latitude was collinear with region and the association survived neither spatial modelling nor sensitivity analyses. Regional differentiation remained robust across analytical specifications, whereas the Old World decline was carried by gene content once standard errors were clustered by country. Conclusion: Worldwide KIR gene-content variation shows pronounced regional differentiation, modest isolation by distance, and no independent latitudinal gradient. Diversity declines with distance from East Africa across the Old World, supporting serial founder effects, but not once the Americas and Oceania are included.
Hein, J.; Katzke, J.; Riedel, A.; Bell, O.; Casadei-Ferreira, A.; Cecilia, A.; Ershov, A.; Farago, T.; Hamann, E.; Sarkar, C.; Syrota, S.; Tavakoli, C.; Zagainov, N.; Zuber, M.; Baumbach, T.; Heethoff, M.; van de Kamp, T.
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Complex biomechanical innovations are often treated as discrete evolutionary breakthroughs, yet their diversification within large radiations remains poorly understood. Beetle leg joints provide a striking example: some weevils possess screw-like coxa-trochanteral articulations in which rotation and axial displacement are mechanically coupled, resembling engineered screw-and-nut mechanisms. Whether these joints represent isolated mechanical extremes, discrete adaptive types or part of a broader continuum of phenotypic variation has remained unknown. Here we combine synchrotron X-ray microtomography, landmark-free atlas-based morphometrics, quantitative functional morphology and phylogenetic comparative analyses to examine the mesocoxa-trochanteral joint in 68 specimens representing seven sampled family-level groups across early-diverging and derived weevil lineages. We show that screw joint evolution combines continuous variation in trochanteral shape with a restricted set of mechanically plausible joint-character combinations, rather than forming sharply separated morphological classes. True screw-and-nut joints are not confined to a distinct region of morphospace, indicating that overall form and mechanical configuration are not necessarily coupled. The occurrence of this configuration in the early diverging Caridae shows that it is not restricted to more derived families. Three-dimensional helix fitting revealed a mosaic geometry, with winding angle showing the clearest relationship with overall shape and joint architecture, whereas axial pitch varied largely independently of shape, size and lineage. Together, these patterns show that screw joint components diversified with different degrees of evolutionary integration. These results recast the weevil screw joint from a singular biomechanical curiosity into a diversified evolutionary system. They suggest that complex functional structures can evolve through the gradual recombination and differential persistence of structurally constrained and evolutionary flexible components, rather than through a single shift from simple to fully specialized designs.
Patramanis, I.; Welker, F.; Skov, L.
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Homo erectus is a species that occupies a central role in the study of human evolution. To investigate its taxonomic identity, Fu et al. 2026 extracted and sequenced enamel proteins from 6 fossils assigned to Homo erectus, originating from 3 localities in China and dated to around 400 thousand years ago. Unexpectedly, all samples possess an amino acid variant on the enamel protein ameloblastin (AMBN) which is uniquely shared with more recent Denisovan fossils and a subset of present day humans who are known to carry introgressed Denisovan ancestry. The samples also showcase an additional, novel variant on the same enamel protein. To explain this result, Fu et al. 2026 propose a model where the sampled Homo erectus population (or its recent ancestors) interbred with later arriving Denisovans, introducing one of the two AMBN variants into the Denisovan population. While this model fits our overall understanding of the interactions between these archaic populations, it rests on the assumption that the Denisovan AMBN variant has an archaic, Homo erectus-like, source. Here we show that the AMBN gene of late Denisovans has no signal of introgression from a super-archaic source, making the suggested model unlikely for this gene. We also show that the AMBN gene of Denisova 25, an earlier Denisova, does show a signal of introgression, but one that better matches Neanderthals and modern humans, rather than a super-archaic source. We propose a number of alternative models that could help explain the observed affinity between the sampled H. erectus and Denisovans without requiring the introgression of AMBN from an archaic source into Denisovans. We discuss their strengths and weaknesses and how new data could help resolve them.
Losso, S. R.; Becker-Kerber, B.; Weaver, J. C.; Perez-Peris, F.; Ortega-Hernandez, J.
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Fossil central nervous systems (CNS) have illuminated several facets of total-group euarthropod evolution, including their phylogenetic affinities, the origin of the head, and their ancestral neuroanatomical organization. However, the CNS remains unknown in trilobites, the most diverse and earliest group of Palaeozoic euarthropods, but can potentially clarify fundamental questions that remain disputed despite thousands of described species and countless studies spanning over two centuries, such as their affinities relative to modern representatives. Here, we describe the CNS of the cheirurid Anacheirurus adserai from the Lower Ordovician Fezouata Shale. Anacheirurus features a brain with well-developed proto, deuto- and tritocerebral neuromeres, an anteriomedian protocerebral protrusion, a central complex, an esophageal foramen, and a ganglionated ventral nerve cord. The CNS is replicated in framboidal iron that differs in texture and composition from the exoskeleton and rock matrix. The overall organization of Anacheirurus's CNS most closely resembles that of Cambrian stem-group mandibulates, and critically shares the presence of a central complex with a protocerebral bridge and lateral accessory lobes with extant pancrustaceans. Our findings provide new morphological support for the hypothesis that Trilobita belongs to the mandibulate stem lineage and bring new insights into the ancestral morphology and evolutionary history of the euarthropod central complex. More broadly, our findings offer direct anatomical evidence of the key sensorimotor system innovations that originated during the Cambrian Information Revolution.
Menendez, L. P.; Lopez-Sosa, M. C.; Montiel Hernandez, G. D.; Siles, W.; Groh, H.; Rios, C.; Acosta Morano, C.; Guevara, D.; Novellino, P.; Mansegosa, D.; Chiavazza, H.; Giannotti, S.; Pastor, S.; Tissera, L.; Recalde, A.; Diaz, I.; Grimoldi, M. S.; Peralta, E.; Abbona, C.; Tappata, M. V.; Del Papa, M.; Beron, M.; Lucero, E.; Messineo, P.; Gonzalez, M.; Scheifler, N.; Solari, A.; Monteiro Da Silva, S.; Pessis, A.-M.; Barberena, R.; Rascovan, N.; Luisi, P.; Chappard, C.
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The human bony labyrinth has attracted increasing interest because of its taxonomic, evolutionary, and functional significance. Although sexual dimorphism has been reported in several aspects of the temporal bone, the extent to which sex, age, size, and allometry contribute to labyrinth shape variation remains poorly understood. Here, we investigated patterns of sexual shape variation in the human bony labyrinth using three-dimensional geometric morphometrics in a sample of 98 archaeological individuals from South America with known genomic sex. Centroid size and allometric effects were assessed in a subset of 90 individuals with comparable metric scaling. In addition to analysing the complete labyrinth, the cochlea and semicircular canals were examined separately to evaluate region-specific patterns of sexual shape variation. Principal Component Analysis showed extensive overlap between females and males, and overall labyrinth shape did not differ significantly between sexes. Males exhibited significantly larger labyrinths than females, and centroid size explained a small but significant proportion of overall shape variation. Regional analyses showed no evidence of significant sexual shape differences in the cochlea or in any individual semicircular canal when analysed separately. In contrast, the combined semicircular canal system exhibited subtle but significant sexual shape variation independent of centroid size, whereas morphological disparity did not differ between sexes. The geometric comparison of the female and male consensus configurations further showed that sexual shape variation was regionally heterogeneous. Whereas the cochlea exhibited a pattern of localized changes with low directional coherence, the semicircular canals displayed more coordinated regional shape changes. The male consensus also exhibited slightly higher canal circularity across all three semicircular canals, particularly the posterior canal, while differences in canal-plane orientation remained minimal. These findings demonstrate that sexual shape variation in the human bony labyrinth is subtle and anatomically partitioned among its components. Although significant sex differences in centroid size were detected across most anatomical regions, overall labyrinth shape and cochlear morphology were primarily influenced by allometry, whereas significant sex-related shape differences were detected only when the semicircular canals were considered as an integrated anatomical system. These findings demonstrate that sexual dimorphism in the human bony labyrinth is subtle but regionally heterogeneous, with the cochlea and semicircular canals exhibiting distinct patterns of shape variation, suggesting that these structures are influenced by different developmental, functional, and evolutionary processes.
Hasegawa, E.; Matsubayashi, J.; Miura, K.; Yamanashi, Y.; Maharani, S.; Tayasu, I.
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Time-series isotope analysis using eye lenses has recently gained attention as a low-cost method for reconstructing long-term information from a single sampling event, with potential applications across diverse taxonomic groups. However, information from eye lenses in birds and mammals remains limited, particularly during early growth stages, and the eye-lens time axis over extended periods should be reconstructed. This study measured the radiocarbon (14C) isotope ratios of eye lenses to examine the temporal framework recorded in the eye lenses of birds and mammals. The calibrated 14C ages of the central lens sections closely matched the known birth years or years preceding their introduction to Japan. 14C ages increased progressively from the center toward the periphery of the eye lens. The Siberian tiger allowed information reconstruction spanning from 2002.4 {+/-} 1.6 to 2017.8 {+/-} 2.0, whereas the ring-tailed lemur yielded reconstructed ages from 2000.2 {+/-} 1.6 to 2019.2 {+/-} 0.0. Calendar ages for all individuals after approximately 2019 could not be resolved using the radiocarbon calibration approach applied in this study. The sulphur-crested cockatoo demonstrated the longest reconstructed time span, covering 27.4 years from 1968.7 {+/-} 1.3 to 1996.1 {+/-} 1.4. Our results indicate that eye lenses can reconstruct long-term information spanning much of the lifespan in mammals examined, whereas avian lenses can preserve information spanning several years to decades after birth. Lens growth patterns may differ according to life history; thus, future studies should examine a wider range of species and taxonomic groups with diverse life histories.
Biswas, S.; Ghosh, K.; Sarkar, K.; Bhadra, A.
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Free-ranging dogs frequently rest near conspecifics, but the demographic factors structuring their resting associations remain poorly understood. We quantified dyadic resting associations in 26 free-ranging dog groups in West Bengal, India, observed between 2019 and 2023. Association strength was estimated from scan based resting co-occurrences using the Half-Weight Index. We tested whether dyadic association strength varied with dyad sex composition, dyad life stage composition, group size, and group sex ratio using a generalised additive model for location, scale and shape that accounted for group identity and repeated occurrence of individuals across dyads. Male-male dyads had lower association strengths than female-female dyads, whereas mixed-sex dyads did not differ from female-female dyads. Association strength decreased with increasing group size but increased as the male-to-female ratio within the group increased, while life-stage composition had no detectable effect. Individual level network metrics, including strength, reach, clustering coefficient, affinity, and eigenvector centrality, did not vary with sex or season. Mixed-sex pairs were also frequently represented among the strongest dyadic associations within groups. These findings indicate that resting associations in free-ranging dogs vary with dyad sex composition and group demography. Further opportunity-controlled analyses are required to determine whether the prominence of mixed-sex dyads reflects preferential association rather than group composition alone.
Choin, J.; de Luna, K.; Fleisher, J.; Sawchuk, E.; Goldstein, S.; Kaliba, P.; Katongo, M.; Morris, A. G.; Mudenda, G.; Welling, M.; Sirak, K.; Callan, K.; Iliev, L.; Lawson, A. M.; Michel, M.; Oppenheimer, J.; Qiu, L.; Workman, J. N.; Kearns, A.; Mah, M.; Soos, G.; Mallick, S.; Rohland, N.; Thompson, J.; Prendergast, M. E.; Reich, D.
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South central Africa, between the Congo Basin, the Great Lakes, and southern Africa, has long served as a corridor for human movement. Yet, it remains unclear whether there is genetic continuity between pre-Iron Age foragers and later Bantu-associated populations and whether the settlement of this region reflects multiple Bantu-associated migrations rather than the simpler serial founder model suggested by existing genomic data. To do so, we generated genome-wide ancient DNA from 71 Iron Age and historical individuals from present-day Zambia and Malawi, and analyzed these genomes alongside published data from present-day Africans. One late Iron Age individual (16th-17th century) from Kalala Island in the Kafue River, Zambia, carries 40% non Bantu related ancestry that closely matches local Later Stone Age foragers. Admixture for this individual is estimated to be 850 years ago, several centuries earlier than reported for present day BaTwa from the same region. Focusing on the Bantu-related ancestry, haplotype-based analyses identify two main clusters among Iron Age, historical, and present-day south central Bantu groups associated with different Bantu-related migrations. These results reveal a layered history in which at least two Bantu expansions radiated from the southern Congo Basin, with south central Africa acting both as a crossroads of these movements and as a staging area for the subsequent southward expansion toward southern Africa.
Maga, A. M.
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Dense semilandmarks describe 3D surfaces with hundreds to thousands of points, and sliding them by bending energy or Procrustes distance is a near-universal default. Three questions remain open: does dense sampling add shape beyond fixed landmarks, how many points are needed, and does sliding help or harm? Real specimens cannot answer them: the true correspondence is unknown. We tested two workflows, ALPACA (single-template registration) and DeCAL (landmark-anchored correspondence), on 496 mouse skulls at 250-1,000 points, with and without sliding, scored by surface reconstruction. We repeated it on 500 synthetic skulls with exact correspondence, measuring each point's distance to its true homologue. Dense semilandmarks lowered error for almost every specimen; the fixed landmarks added little but supplied anchoring the semilandmarks could not, and the anchored method was more accurate. The benefit saturated near 250 points for ALPACA but kept improving to 1,000 for DeCAL. Procrustes-distance sliding harmed every configuration; bending-energy sliding helped only a poor, landmark-free correspondence, vanishing once anatomical anchors spanned the form. Match the sliding decision to the correspondence in hand: relax a poor one, leave a good one alone, never slide toward the mean. Known-correspondence specimens offer a general test of landmarking and sliding against ground truth.
Hirota, K.; Sasaki, T.; Setiamarga, D. H. E.
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The nautilus (Nautilus sp.) is an early-branching cephalopods. It retains several conchiferan synapomorphies, including an external planispiral biomineralized shell. The shells complex structure allows it to withstand hydrostatic pressure, control buoyancy, and protect against external hazards. In this study, we comprehensively examined shell microstructures across different shell components and regions representing various ontogenetic stages in two adult museum shell specimens. We found that the nautilus shell is composed of five microstructural types (spherulitic, prismatic, nacreous, semi-prismatic, and irregularly oriented prismatic structures) organized into layered architectures within individual shell components and coordinated across the shell as an integrated system. Our observations highlight transitions between distinct microstructures within and across shell components and local variation within individual components such as the dorsal and ventral shell walls, suggesting that these patterns may contribute to shell strength and overall mechanical performance. Variation in caecum morphology suggests that this structure may be developmentally plastic and subject to relatively relaxed structural constraints. These findings show that the Nautilus shell is an integrated biomineral system in which diverse microstructures are organized across shell components to meet functional demands and provide the mechanical strength needed for survival.
Naumova, A. E.; Fedosov, A. O.; Nikoniva, V. R.; Bergaliev, A. M.; Dymskaya, M. M.; Smorkatcheva, A. V.
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Adult sex ratios in mammals are usually female-biased, but the northern mole vole (Ellobius talpinus) (Pallas, 1770), a cooperatively breeding subterranean rodent, shows a persistent male bias that increases with age. Combining four years of capture-mark-recapture data with radiographic age estimation and genetic parentage data, we modeled apparent survival and state transitions (young-of-the-year, breeder, non-breeder) separately by sex. Young individuals showed significantly lower apparent survival than adults in both sexes, consistent with dispersal occurring predominantly in the first year of life. Within each age class, females showed consistently lower apparent survival than males, and this pattern held within breeding and non-breeding status groups alike, with female breeders showing lower apparent survival than male breeders. These results point to female-biased natal dispersal, an atypical pattern for mammals. We propose that faster turnover of reproductive females than males, in combination with singular breeding, favor female dispersal in search of vacant breeding positions, while promoting male philopatry and facultative polyandry.